Changes in version 2.2.0 (2025-08-18)                  

New kriging function

  - New wkrig_gd() for improved kriging performance.
  - Superseded krig_gd(): This legacy function now gives a deprecation
    warning and requires manual installation of the automap package.

                 Changes in version 2.1.2 (2024-05-16)                  

Patch to fix L argument defaults and improve documentation.

The wingen default for all functions is now L = "nvariants", which sets
L to the number of variants in the VCF when calculating pi. This was
already the default in the original window_gd() function, but
circle_gd() and resist_gd() had L = NULL as the default, which returns
the sum over SNPs of nucleotide diversity. We have also improved
documentation for L.

                 Changes in version 2.1.1 (2024-02-27)                  

Minor changes for CRAN

Switch to ggplot() in examples and preview_gd()

  - Switch from using base R plotting with plot_gd()/plot_count() to
    ggplot plotting with ggplot_gd()/ggplot_count() in the README,
    vignette, andpreview_gd() functions
  - This was done to avoid modifying the users environment with par()
  - plot_gd() and plot_count() can still be used

Simplification of vignette and examples

  - To decrease code test time for CRAN the vignettes and the examples
    were reduced, however the core information remains the same

                        Changes in version 2.1.0                        

Fixed handling of arguments passed to functions via ...

There was a bug that resulted in arguments not being passed
to*_general()/*_gd() functions; this has been fixed for *_general() and
deprecated for *gd() (see below)

Deprecation of ... for window_gd()/circle_gd()/resist_gd() and addition of sig argument

  - The use of ... has been deprecated for these functions because it
    wasn't actually passing the ... arguments to anywhere in the first
    place, so this should hopefully not affect any users
  - The only argument that may have been passed via ... is sig which is
    used to set the alpha threshold when stat = "hwe". We have addressed
    this issue by adding sig as an argument to all of the functions.

Removal of parallel and ncores arguments

parallelization must now be set up outside of functions, as described in
the vignette

Removal of sp

The sp package is no longer imported by wingen

Changes to grd argument

The grd argument in krig_gd() now only accepts SpatRaster and Raster
objects

                        Changes in version 2.0.1                        

DOI

Deprecation of parallel and ncores arguments

The parallel and ncores arguments have been deprecated for all
functions.

Instead, future::plan() should be used to setup parallelization (see the
package vignette for more details).

                        Changes in version 2.0.0                        

DOI

Major updates

  - Circular and resistance-based windows are now possible using the
    circle_gd()/circle_general() and resist_gd()/resist_general()(
    functions
  - preview_gd() takes a new argument (method) to specify which method
    to generate a preview of ("window", "circle", or "resist")
  - Window size across the landscape can now be varied by providing a
    raster for maxdist for circle_gd()/resist_gd()
  - New population genetic statistic options (specified using stat)
  - Create ggplots using ggplot_gd() and ggplot_count()

Minor updates

  - All moving window functions can now accept more than one statistic
    at a time in the form of a vector
  - plot_gd() will now generate plots for all layers except the sample
    count layer and vise versa for plot_count()

                        Changes in version 1.1.0                        

DOI

Update to terra and sf

  - The guts of wingen have been updated from raster to terra and now
    incorporate sf
  - Rasters can now be provided as terra SpatRasters or raster
    RasterLayers
  - Coordinates can now be provided as sf points, a two-column matrix,
    or a data.frame representing x and y coordinates.

Breaking changes

  - wingen is no longer agnostic to projection. Checks have been added
    that will give warnings for missing CRS and errors for mismatched
    CRS. The vignette and docs have also been updated to discuss the
    effects of projection and provide guidance on transformations.
  - The first argument of window_gd() is now called gen instead of vcf.
    The argument is otherwise the same (i.e., takes the same input),
    however the name was generalized such that future versions could
    potentially take different types of genetic data without confusion.
  - The second argument of mask_gd() is now called y instead of mask to
    avoid conflation with the function mask()
  - mask_gd() will longer provide the option to resample rasters,
    rasters must be transformed before the function is used

                        Changes in version 1.0.0                        

DOI

Initial release of the wingen R package